STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Patl_0936PFAM: FecR protein; KEGG: cps:CPS_0244 putative regulatory protein. (350 aa)    
Predicted Functional Partners:
Patl_0937
RNA polymerase, sigma-24 subunit, RpoE; PFAM: sigma-70 region 2 sigma-70 region 4 Sigma-70, region 4 type 2; KEGG: cps:CPS_0243 putative RNA polymerase sigma-70 factor FecI; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 0.959
Patl_0786
PFAM: FecR protein; KEGG: ppu:PP0866 transmembrane sensor, putative.
  
 
 
0.928
Patl_1521
PFAM: FecR protein; KEGG: cps:CPS_0244 putative regulatory protein.
  
  
 
0.922
Patl_1522
RNA polymerase, sigma-24 subunit, RpoE; PFAM: sigma-70 region 2 sigma-70 region 4 Sigma-70, region 4 type 2; KEGG: pfl:PFL_3156 RNA polymerase sigma-70 factor, ECF subfamily.
 
 
 0.801
Patl_0311
TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: nar:Saro_1823 TonB-dependent siderophore receptor.
 
 
 0.734
Patl_0939
PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: ccr:CC3461 TonB-dependent receptor.
 
  
 0.728
Patl_3776
TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: pha:PSHAa1584 TonB-dependent receptor for ferrichrome transport.
 
 
 0.689
Patl_1142
TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: xcb:XC_2846 iron receptor.
 
 
 0.685
Patl_1443
TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: ana:alr2588 ferrichrome-iron receptor.
 
 
 0.683
Patl_0787
RNA polymerase, sigma-24 subunit, RpoE; PFAM: sigma-70 region 2 Sigma-70, region 4 type 2; KEGG: pfo:Pfl_4345 sigma-24 (FecI); Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 0.682
Your Current Organism:
Pseudoalteromonas atlantica
NCBI taxonomy Id: 342610
Other names: P. atlantica T6c, Pseudoalteromonas atlantica T6c, Pseudoalteromonas atlantica str. T6c, Pseudoalteromonas atlantica strain T6c
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