STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Patl_0937RNA polymerase, sigma-24 subunit, RpoE; PFAM: sigma-70 region 2 sigma-70 region 4 Sigma-70, region 4 type 2; KEGG: cps:CPS_0243 putative RNA polymerase sigma-70 factor FecI; Belongs to the sigma-70 factor family. ECF subfamily. (206 aa)    
Predicted Functional Partners:
Patl_0936
PFAM: FecR protein; KEGG: cps:CPS_0244 putative regulatory protein.
 
 
 0.959
Patl_3154
Anti sigma-E protein, RseA; An anti-sigma factor for extracytoplasmic function (ECF) sigma factor sigma-E (RpoE). ECF sigma factors are held in an inactive form by an anti-sigma factor until released by regulated intramembrane proteolysis (RIP). RIP occurs when an extracytoplasmic signal triggers a concerted proteolytic cascade to transmit information and elicit cellular responses. The membrane-spanning regulatory substrate protein is first cut periplasmically (site-1 protease, S1P, DegS), then within the membrane itself (site-2 protease, S2P, RseP), while cytoplasmic proteases finish [...]
  
 
 0.869
Patl_1521
PFAM: FecR protein; KEGG: cps:CPS_0244 putative regulatory protein.
 
 
 0.828
Patl_0786
PFAM: FecR protein; KEGG: ppu:PP0866 transmembrane sensor, putative.
 
 
 0.827
Patl_1522
RNA polymerase, sigma-24 subunit, RpoE; PFAM: sigma-70 region 2 sigma-70 region 4 Sigma-70, region 4 type 2; KEGG: pfl:PFL_3156 RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.630
Patl_0935
PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: pha:PSHAa2973 secreted TonB-dependent receptor.
 
    0.584
Patl_0939
PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: ccr:CC3461 TonB-dependent receptor.
 
    0.548
Patl_3627
PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: cps:CPS_4488 TonB-dependent receptor.
  
    0.540
Patl_0787
RNA polymerase, sigma-24 subunit, RpoE; PFAM: sigma-70 region 2 Sigma-70, region 4 type 2; KEGG: pfo:Pfl_4345 sigma-24 (FecI); Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.537
rpoC
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.518
Your Current Organism:
Pseudoalteromonas atlantica
NCBI taxonomy Id: 342610
Other names: P. atlantica T6c, Pseudoalteromonas atlantica T6c, Pseudoalteromonas atlantica str. T6c, Pseudoalteromonas atlantica strain T6c
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