STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Patl_0967PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: pha:PSHAa0840 TonB-dependent receptor. (869 aa)    
Predicted Functional Partners:
Patl_2756
PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: cps:CPS_0936 TonB-dependent receptor.
  
    0.773
Patl_2865
PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: nar:Saro_2447 TonB-dependent receptor.
  
    0.761
Patl_1980
PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: pha:PSHAa2947 TonB-dependent receptor.
  
    0.642
Patl_2712
PFAM: protein of unknown function DUF1001; KEGG: cya:CYA_2044 CpeT protein.
  
     0.628
Patl_0377
PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: cps:CPS_2088 TonB-dependent receptor.
  
    0.616
Patl_3904
PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: pha:PSHAa2138 TonB-dependent receptor.
  
    0.615
Patl_2711
PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: cps:CPS_2088 TonB-dependent receptor.
  
    0.613
Patl_3901
PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: aci:ACIAD1534 putative TonB-dependent receptor protein (outer membrane salicin receptor).
  
    0.608
Patl_0155
PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: nar:Saro_2601 TonB-dependent receptor.
  
    0.600
Patl_0939
PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: ccr:CC3461 TonB-dependent receptor.
  
    0.596
Your Current Organism:
Pseudoalteromonas atlantica
NCBI taxonomy Id: 342610
Other names: P. atlantica T6c, Pseudoalteromonas atlantica T6c, Pseudoalteromonas atlantica str. T6c, Pseudoalteromonas atlantica strain T6c
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.