STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Patl_0983TIGRFAM: acetylornithine deacetylase (ArgE); PFAM: peptidase M20 peptidase dimerisation; KEGG: cps:CPS_0459 acetylornithine deacetylase. (381 aa)    
Predicted Functional Partners:
argG
PFAM: argininosuccinate synthase; KEGG: cps:CPS_0463 argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 1 subfamily.
  
 0.993
Patl_0980
KEGG: son:SO0277 ornithine carbamoyltransferase; TIGRFAM: ornithine carbamoyltransferase; PFAM: aspartate/ornithine carbamoyltransferase, Asp/Orn-binding region aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain.
  
 
 0.980
argC
N-acetyl-gamma-glutamyl-phosphate reductase; Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde. Belongs to the NAGSA dehydrogenase family. Type 1 subfamily.
 
 
 0.943
argB
N-acetylglutamate kinase; Catalyzes the ATP-dependent phosphorylation of N-acetyl-L- glutamate; Belongs to the acetylglutamate kinase family. ArgB subfamily.
 
  
 0.929
argD
TIGRFAM: acetylornithine and succinylornithine aminotransferases; PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase aminotransferase class-III; KEGG: pha:PSHAa0194 N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily.
  
 
 0.918
argD-2
TIGRFAM: acetylornithine and succinylornithine aminotransferases; PFAM: aminotransferase class-III; KEGG: pha:PSHAb0428 bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily.
  
 
 0.918
argH
TIGRFAM: argininosuccinate lyase; PFAM: fumarate lyase; KEGG: pha:PSHAa2287 argininosuccinate lyase.
 
  
 0.801
argA
N-acetylglutamate synthase; TIGRFAM: amino-acid N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase aspartate/glutamate/uridylate kinase; KEGG: cps:CPS_0465 amino-acid N-acetyltransferase; Belongs to the acetyltransferase family. ArgA subfamily.
 
  
 0.773
Patl_0984
PFAM: Kelch repeat; KEGG: cps:CPS_3966 kelch motif domain protein.
  
    0.544
Patl_3084
PFAM: flagellar protein FlaG protein; KEGG: ppr:PBPRA0914 hypothetical flagellin FlaG.
  
 
   0.425
Your Current Organism:
Pseudoalteromonas atlantica
NCBI taxonomy Id: 342610
Other names: P. atlantica T6c, Pseudoalteromonas atlantica T6c, Pseudoalteromonas atlantica str. T6c, Pseudoalteromonas atlantica strain T6c
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