STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Patl_1027Signal transduction histidine kinase, nitrogen specific, NtrB; PFAM: ATP-binding region, ATPase-like histidine kinase A-like PAS fold; SMART: PAS; KEGG: vvy:VV0197 nitrogen regulation protein NtrB. (359 aa)    
Predicted Functional Partners:
ntrC
Nitrogen metabolism transcriptional regulator, NtrC, Fis family; Member of the two-component regulatory system NtrB/NtrC, which controls expression of the nitrogen-regulated (ntr) genes in response to nitrogen limitation. Phosphorylated NtrC binds directly to DNA and stimulates the formation of open promoter-sigma54-RNA polymerase complexes.
 0.998
Patl_3162
PFAM: nitrogen regulatory protein P-II; KEGG: ilo:IL1185 nitrogen regulatory protein PII; Belongs to the P(II) protein family.
  
 0.987
Patl_3604
PAS/PAC sensor hybrid histidine kinase; KEGG: hch:HCH_00794 FOG: PAS/PAC domain; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver ATP-binding region, ATPase-like histidine kinase A-like PAS fold-3 PAS fold-4 PAS fold; SMART: PAS PAC motif.
 
 
 0.944
Patl_4152
Histidine kinase; PFAM: response regulator receiver ATP-binding region, ATPase-like histidine kinase A-like; KEGG: pha:PSHAa2394 two-component sensor histidine kinase and response regulator hybrid.
 
 
 0.908
Patl_0491
PFAM: nitrogen regulatory protein P-II; KEGG: vvy:VV2748 nitrogen regulatory protein PII; Belongs to the P(II) protein family.
  
 
 0.882
Patl_1026
KEGG: son:SO4470 hypothetical protein.
       0.801
Patl_1025
KEGG: vfi:VF0098 glutamine synthetase; TIGRFAM: glutamine synthetase, type I; PFAM: glutamine synthetase, catalytic region glutamine synthetase, beta-Grasp.
  
  
 0.740
Patl_0637
PFAM: Rh-like protein/ammonium transporter; KEGG: ppr:PBPRB0379 putative ammonium permease; TC 1.A.11.
 
 
 0.723
Patl_0492
PFAM: Rh-like protein/ammonium transporter; KEGG: cps:CPS_0642 putative ammonium transporter; TC 1.A.11.
  
 
 0.682
Patl_1054
PAS/PAC sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase-like histidine kinase A-like PAS fold; KEGG: pha:PSHAa0598 phosphate regulon sensor protein PhoR.
  
   
 0.671
Your Current Organism:
Pseudoalteromonas atlantica
NCBI taxonomy Id: 342610
Other names: P. atlantica T6c, Pseudoalteromonas atlantica T6c, Pseudoalteromonas atlantica str. T6c, Pseudoalteromonas atlantica strain T6c
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