STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Patl_1069PFAM: glycoside hydrolase, family 8; KEGG: bha:BH2105 xylanase Y. (912 aa)    
Predicted Functional Partners:
Patl_2657
Endo-1,4-beta-xylanase; PFAM: glycoside hydrolase, family 10; KEGG: xcb:XC_4207 endo-1,4-beta-xylanase A.
 
   
 0.777
Patl_1068
Hypothetical protein.
       0.773
Patl_0842
Alpha-L-arabinofuranosidase; PFAM: glycoside hydrolase, family 43; KEGG: bcl:ABC1148 xylosidase/arabinosidase; Belongs to the glycosyl hydrolase 43 family.
   
 0.698
Patl_0810
PFAM: Carbohydrate binding family 6 glycoside hydrolase, family 43; SMART: Cellulose binding, type IV; KEGG: bth:BT1781 xylosidase/arabinosidase; Belongs to the glycosyl hydrolase 43 family.
   
 0.693
Patl_3728
Alpha-L-arabinofuranosidase; PFAM: glycoside hydrolase, family 43; KEGG: xcb:XC_4214 xylosidase/arabinosidase; Belongs to the glycosyl hydrolase 43 family.
   
 0.678
Patl_3274
Cellobiose phosphorylase; PFAM: glycosyltransferase 36 glycosyltransferase 36 associated; KEGG: tma:TM1848 cellobiose-phosphorylase.
  
   
 0.666
Patl_1404
Cellulase; PFAM: glycoside hydrolase, family 5 Thrombospondin type 3 repeat Carbohydrate-binding family V/XII; KEGG: hch:HCH_03914 endoglucanase; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
  
   
 0.563
Patl_1852
PFAM: glycoside hydrolase family 2, sugar binding; KEGG: bfr:BF3493 sialic acid-specific 9-O-acetylesterase.
 
     0.496
Patl_0830
KEGG: bth:BT3132 sialic acid-specific 9-O-acetylesterase.
 
     0.483
Patl_1198
PFAM: glycosyl transferase, family 2; KEGG: pfo:Pfl_2017 glycosyl transferase, family 2.
  
  
 0.479
Your Current Organism:
Pseudoalteromonas atlantica
NCBI taxonomy Id: 342610
Other names: P. atlantica T6c, Pseudoalteromonas atlantica T6c, Pseudoalteromonas atlantica str. T6c, Pseudoalteromonas atlantica strain T6c
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