STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Patl_1112PFAM: DSBA oxidoreductase; KEGG: cps:CPS_2425 DsbA-like thioredoxin domain protein. (435 aa)    
Predicted Functional Partners:
Patl_1113
PFAM: helix-turn-helix, AraC type; KEGG: pae:PA0831 transcriptional regulator OruR.
 
     0.567
Patl_3336
KEGG: eli:ELI_11930 glutathione S-transferase.
 
    0.549
Patl_4185
KEGG: mbo:Mb2023 hypothetical protein.
 
     0.523
Patl_0640
KEGG: cps:CPS_2782 hypothetical protein.
  
     0.508
Patl_1863
PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: cps:CPS_1927 TonB dependent receptor.
  
     0.507
Patl_2258
PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: cps:CPS_1927 TonB dependent receptor.
  
     0.486
Patl_1915
PFAM: alpha/beta hydrolase fold; KEGG: ccr:CC1175 haloalkane dehalogenase, putative.
  
     0.478
Patl_1111
PFAM: protein of unknown function DUF1568; KEGG: pha:PSHAb0050 hypothetical protein.
       0.411
Your Current Organism:
Pseudoalteromonas atlantica
NCBI taxonomy Id: 342610
Other names: P. atlantica T6c, Pseudoalteromonas atlantica T6c, Pseudoalteromonas atlantica str. T6c, Pseudoalteromonas atlantica strain T6c
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.