STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Patl_1176Hypothetical protein. (377 aa)    
Predicted Functional Partners:
Patl_3774
KEGG: ccr:CC1519 hypothetical protein.
 
 
 0.874
Patl_1198
PFAM: glycosyl transferase, family 2; KEGG: pfo:Pfl_2017 glycosyl transferase, family 2.
 
  
 0.809
Patl_0357
KEGG: gvi:glr0437 unknown protein.
  
 
 0.785
Patl_3143
PFAM: ABC-2 type transporter; KEGG: pae:PA3671 putative ABC-2 type transport system permease protein.
  
 
 0.785
Patl_1199
Hypothetical protein.
 
     0.783
Patl_1177
KEGG: dvu:DVUA0053 hypothetical protein.
 
     0.769
Patl_1873
PFAM: FMN-binding; KEGG: cps:CPS_1884 putative regulatory protein NosR.
 
  
 0.769
Patl_1178
PFAM: glycosyl transferase, group 1; KEGG: dar:Daro_2405 glycosyl transferase, group 1.
 
     0.766
Patl_1196
KEGG: nar:Saro_1349 hypothetical protein.
  
     0.765
Patl_1197
PFAM: glycosyl transferase, group 1; KEGG: gme:Gmet_2001 glycosyl transferase, group 1.
  
     0.725
Your Current Organism:
Pseudoalteromonas atlantica
NCBI taxonomy Id: 342610
Other names: P. atlantica T6c, Pseudoalteromonas atlantica T6c, Pseudoalteromonas atlantica str. T6c, Pseudoalteromonas atlantica strain T6c
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.