STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Patl_1287KEGG: pca:Pcar_0146 transporter, NRAMP family. (427 aa)    
Predicted Functional Partners:
Patl_1288
Transcriptional regulator, TetR family; PFAM: helix-turn-helix, AraC type regulatory protein, TetR; KEGG: reu:Reut_B3613 regulatory protein, TetR.
       0.556
Patl_1876
TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: son:SO3403 ribosomal subunit interface protein.
       0.501
Patl_1286
PFAM: glutathione-dependent formaldehyde-activating, GFA; KEGG: pha:PSHAa2411 hypothetical protein.
       0.489
Patl_1679
Peptidase M28; PFAM: Fibronectin, type III peptidase M28; KEGG: ilo:IL1071 probable aminopeptidase fused to fibronectin type 3 domain.
 
     0.418
Patl_3815
PFAM: natural resistance-associated macrophage protein; KEGG: ilo:IL2296 Mn2+/Fe2+ transporter, NRAMP family.
  
     0.400
Your Current Organism:
Pseudoalteromonas atlantica
NCBI taxonomy Id: 342610
Other names: P. atlantica T6c, Pseudoalteromonas atlantica T6c, Pseudoalteromonas atlantica str. T6c, Pseudoalteromonas atlantica strain T6c
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.