STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Patl_1372Transcriptional regulator, LysR family; PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: cps:CPS_4921 substrate-binding transcriptional regulator, LysR family. (293 aa)    
Predicted Functional Partners:
Patl_2788
Transcriptional regulator, LysR family; PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: cps:CPS_2699 transcription regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.726
Patl_2973
Transcriptional regulator, LysR family; PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: son:SO1907 transcriptional regulator, LysR family.
  
     0.721
Patl_1719
Transcriptional regulator, LysR family; PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: rpb:RPB_0879 transcriptional regulator, LysR family.
  
     0.715
Patl_4014
Transcriptional regulator, LysR family; PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: eli:ELI_02280 hydrogen peroxide-inducible genes activator protein; Belongs to the LysR transcriptional regulatory family.
  
     0.666
Patl_1675
Transcriptional regulator, LysR family; PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: son:SO3318 transcriptional regulator, LysR family.
  
     0.643
Patl_1373
PFAM: aldo/keto reductase; KEGG: pha:PSHAa0541 oxidoreductase, aldo/keto reductase.
       0.525
Patl_1624
Transcriptional regulator, LysR family; PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: cps:CPS_1200 transcriptional regulator for cysteine regulon.
  
     0.501
Patl_2618
Transcriptional regulator, LysR family; PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: son:SO1876 NodD transcription activator-related protein; Belongs to the LysR transcriptional regulatory family.
  
     0.483
Patl_3312
Transcriptional regulator, LysR family; PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: ilo:IL2577 transcriptional regulator of LysR family.
  
     0.471
Patl_3897
Transcriptional regulator, LysR family; PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: bur:Bcep18194_C7575 transcriptional regulator, LysR family.
  
     0.408
Your Current Organism:
Pseudoalteromonas atlantica
NCBI taxonomy Id: 342610
Other names: P. atlantica T6c, Pseudoalteromonas atlantica T6c, Pseudoalteromonas atlantica str. T6c, Pseudoalteromonas atlantica strain T6c
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