STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Patl_1462PFAM: Enoyl-CoA hydratase/isomerase; KEGG: reu:Reut_A0450 enoyl-CoA hydratase/isomerase. (253 aa)    
Predicted Functional Partners:
Patl_2321
PFAM: 3-hydroxyacyl-CoA dehydrogenase-like 3-hydroxyacyl-CoA dehydrogenase, NAD-binding NAD-dependent glycerol-3-phosphate dehydrogenase-like; KEGG: bbr:BB1500 putative 3-hydroxybutyryl-CoA dehydrogenase.
 
 0.885
fadA
3-ketoacyl-CoA thiolase; Catalyzes the final step of fatty acid oxidation in which acetyl-CoA is released and the CoA ester of a fatty acid two carbons shorter is formed.
 
 0.834
fadI
3-ketoacyl-CoA thiolase; Catalyzes the final step of fatty acid oxidation in which acetyl-CoA is released and the CoA ester of a fatty acid two carbons shorter is formed.
 
 0.830
Patl_3604
PAS/PAC sensor hybrid histidine kinase; KEGG: hch:HCH_00794 FOG: PAS/PAC domain; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver ATP-binding region, ATPase-like histidine kinase A-like PAS fold-3 PAS fold-4 PAS fold; SMART: PAS PAC motif.
    
 
 0.794
Patl_1985
Multi-sensor hybrid histidine kinase; PFAM: Na+/solute symporter response regulator receiver ATP-binding region, ATPase-like histidine kinase A-like; SMART: PAS; KEGG: ilo:IL2152 multidomain protein, contains Na+/proline symporter PutP-like domain, sensory histidine kinase and receiver domain.
  
 
 0.789
Patl_2818
Periplasmic sensor hybrid histidine kinase; PFAM: response regulator receiver ATP-binding region, ATPase-like histidine kinase A-like; KEGG: vch:VC1349 sensory box sensor histidine kinase/response regulator.
    
 
 0.786
Patl_4152
Histidine kinase; PFAM: response regulator receiver ATP-binding region, ATPase-like histidine kinase A-like; KEGG: pha:PSHAa2394 two-component sensor histidine kinase and response regulator hybrid.
    
 
 0.786
Patl_2664
GAF sensor hybrid histidine kinase; PFAM: response regulator receiver GAF ATP-binding region, ATPase-like histidine kinase A-like PAS fold-3; SMART: PAC motif; KEGG: dar:Daro_1614 PAS.
    
 
 0.785
Patl_3747
KEGG: vch:VC2369 sensor histidine kinase FexB; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver ATP-binding region, ATPase-like histidine kinase A-like Hpt PAS fold-3 PAS fold-4 PAS fold; SMART: PAS PAC motif.
    
 
 0.785
Patl_0523
Multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: Na+/solute symporter response regulator receiver ATP-binding region, ATPase-like histidine kinase A-like; KEGG: pha:PSHAa0585 sensory box histidine kinase/response regulator.
   
 
 0.783
Your Current Organism:
Pseudoalteromonas atlantica
NCBI taxonomy Id: 342610
Other names: P. atlantica T6c, Pseudoalteromonas atlantica T6c, Pseudoalteromonas atlantica str. T6c, Pseudoalteromonas atlantica strain T6c
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.