Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
Patl_1295 | Patl_1469 | KEGG: rba:RB641 sensory histidine protein kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver GAF ATP-binding region, ATPase-like histidine kinase A-like PAS fold-3 PAS fold-4 PAS fold; SMART: PAS PAC motif. | UspA; PFAM: UspA; KEGG: son:SO3681 universal stress protein family. | 0.407 |
Patl_1468 | Patl_1469 | PFAM: Endonuclease/exonuclease/phosphatase; KEGG: bba:Bd1711 hypothetical protein. | UspA; PFAM: UspA; KEGG: son:SO3681 universal stress protein family. | 0.444 |
Patl_1469 | Patl_1295 | UspA; PFAM: UspA; KEGG: son:SO3681 universal stress protein family. | KEGG: rba:RB641 sensory histidine protein kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver GAF ATP-binding region, ATPase-like histidine kinase A-like PAS fold-3 PAS fold-4 PAS fold; SMART: PAS PAC motif. | 0.407 |
Patl_1469 | Patl_1468 | UspA; PFAM: UspA; KEGG: son:SO3681 universal stress protein family. | PFAM: Endonuclease/exonuclease/phosphatase; KEGG: bba:Bd1711 hypothetical protein. | 0.444 |
Patl_1469 | Patl_2284 | UspA; PFAM: UspA; KEGG: son:SO3681 universal stress protein family. | Transporter, CPA2 family; PFAM: TrkA-N sodium/hydrogen exchanger; KEGG: hch:HCH_06854 Kef-type K+ transport system, predicted NAD-binding component; TC 2.A.37; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family. | 0.431 |
Patl_2284 | Patl_1469 | Transporter, CPA2 family; PFAM: TrkA-N sodium/hydrogen exchanger; KEGG: hch:HCH_06854 Kef-type K+ transport system, predicted NAD-binding component; TC 2.A.37; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family. | UspA; PFAM: UspA; KEGG: son:SO3681 universal stress protein family. | 0.431 |