STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Patl_1486PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: hch:HCH_05457 outer membrane receptor for ferrienterochelin and colicins. (677 aa)    
Predicted Functional Partners:
Patl_1487
KEGG: hch:HCH_05459 hypothetical protein.
 
     0.917
Patl_2276
Outer membrane transport energization protein TonB; TIGRFAM: TonB family protein; KEGG: pst:PSPTO0067 tonB protein; TC 2.C.1.1.1.
 
 
 
 0.715
Patl_1488
PFAM: periplasmic binding protein; KEGG: ilo:IL0113 ABC-type hemin transport system, periplasmic component.
 
     0.635
Patl_1489
PFAM: transport system permease protein; KEGG: ilo:IL0114 ABC-type hemin transport system, pemease component; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
     0.622
Patl_1064
Outer membrane transport energization protein TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
   
 
 0.602
Patl_2986
Outer membrane transport energization protein TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
   
 
 0.602
Patl_3539
Outer membrane transport energization protein TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
   
 
 0.602
Patl_1142
TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: xcb:XC_2846 iron receptor.
  
   
 0.580
Patl_2275
PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: rpa:RPA3480 putative outer membrane receptor for iron transport.
  
   
 0.544
Patl_1490
PFAM: ABC transporter related; SMART: ATPase; KEGG: hch:HCH_05463 ABC-type hemin transport system, ATPase component.
 
     0.539
Your Current Organism:
Pseudoalteromonas atlantica
NCBI taxonomy Id: 342610
Other names: P. atlantica T6c, Pseudoalteromonas atlantica T6c, Pseudoalteromonas atlantica str. T6c, Pseudoalteromonas atlantica strain T6c
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