STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Patl_1576Carbohydrate ABC transporter ATP-binding protein, CUT1 family; PFAM: ABC transporter related; SMART: ATPase; KEGG: sme:SMb20630 putative sugar uptake ABC transporter ATP-binding protein; TC 3.A.1.1.-; Belongs to the ABC transporter superfamily. (381 aa)    
Predicted Functional Partners:
Patl_4117
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMc01497 probable sorbitol/mannitol transport inner membrane transmembrane protein.
 
 0.996
Patl_4118
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMc01498 probable sorbitol/mannitol transport inner membrane protein.
 
 0.994
Patl_4116
PFAM: extracellular solute-binding protein, family 1; KEGG: sme:SMc01496 probable sorbitol-binding periplasmic protein.
 
 0.957
Patl_4119
PFAM: ABC transporter related TOBE Transport-associated OB; SMART: ATPase; KEGG: ret:RHE_CH03679 sorbitol/mannitol ABC transporter, ATP-binding protein.
  
  
 
0.910
Patl_3009
KEGG: ppr:PBPRA2444 putative peptide ABC transporter, ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related Oligopeptide/dipeptide ABC transporter-like; SMART: ATPase; Belongs to the ABC transporter superfamily.
 
    
0.854
Patl_2572
Carbohydrate ABC transporter substrate-binding protein, CUT1 family; PFAM: extracellular solute-binding protein, family 1; KEGG: hch:HCH_00071 ABC-type sugar transport system, periplasmic component; TC 3.A.1.1.-.
  
 
 0.732
Patl_3985
Carbohydrate ABC transporter substrate-binding protein, CUT1 family; PFAM: extracellular solute-binding protein, family 1; KEGG: hch:HCH_00071 ABC-type sugar transport system, periplasmic component; TC 3.A.1.1.-.
  
 
 0.732
Patl_2509
PTS system D-glucose-specific IIA component, Glc family; PFAM: sugar-specific permease, EIIA 1 domain; KEGG: msu:MS1508 phosphotransferase system IIA components; TC 4.A.1.1.1.
   
 
 0.689
tpiA
Triosephosphate isomerase; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family.
  
  
 0.544
Patl_2153
Molybdate ABC transporter, inner membrane subunit; Part of the binding-protein-dependent transport system for molybdenum; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.
     0.512
Your Current Organism:
Pseudoalteromonas atlantica
NCBI taxonomy Id: 342610
Other names: P. atlantica T6c, Pseudoalteromonas atlantica T6c, Pseudoalteromonas atlantica str. T6c, Pseudoalteromonas atlantica strain T6c
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