STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Patl_1641PFAM: peptidase M14, carboxypeptidase A; KEGG: pha:PSHAa1899 zinc carboxypeptidase domain protein. (375 aa)    
Predicted Functional Partners:
Patl_1642
TIGRFAM: amino acid carrier protein; PFAM: sodium:alanine symporter; KEGG: pha:PSHAa1898 Na(+)-linked D-alanine glycine permease.
       0.770
Patl_1643
KEGG: cps:CPS_2564 hypothetical protein.
 
   
 0.607
Patl_1644
PFAM: protein of unknown function DUF1315; KEGG: pha:PSHAa1896 hypothetical protein.
     
 0.529
Patl_1640
Glyceraldehyde-3-phosphate dehydrogenase, type I; KEGG: pha:PSHAa1900 glyceraldehyde 3-phosphate dehydrogenase; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
       0.504
Patl_1645
KEGG: cps:CPS_2566 hypothetical protein.
  
    0.489
Patl_0650
PFAM: arginine N-succinyltransferase beta subunit; KEGG: cps:CPS_0635 arginine N-succinyltransferase.
  
     0.447
Patl_0164
PFAM: arginine N-succinyltransferase beta subunit; KEGG: pha:PSHAb0427 putative arginine succinyltransferase.
  
     0.423
Your Current Organism:
Pseudoalteromonas atlantica
NCBI taxonomy Id: 342610
Other names: P. atlantica T6c, Pseudoalteromonas atlantica T6c, Pseudoalteromonas atlantica str. T6c, Pseudoalteromonas atlantica strain T6c
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.