STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Patl_1686PFAM: Mandelate racemase/muconate lactonizing enzyme-like; KEGG: cps:CPS_1173 mandelate racemase/muconate lactonizing enzyme family protein. (391 aa)    
Predicted Functional Partners:
Patl_0898
PFAM: 2-keto-3-deoxy-galactonokinase; KEGG: xcv:XCV1794 putative 2-oxo-3-deoxygalactonate kinase.
 
 
 0.928
Patl_3530
PFAM: 2-keto-3-deoxy-galactonokinase; KEGG: ccr:CC0785 2-dehydro-3-deoxygalactonokinase.
 
 
 0.928
Patl_2646
Galactonate dehydratase; PFAM: Mandelate racemase/muconate lactonizing enzyme-like; KEGG: ret:RHE_PE00096 putative galactonate dehydratase protein.
  
  
 
0.925
Patl_1685
PFAM: class II aldolase/adducin-like; KEGG: pha:PSHAa0286 hypothetical protein.
 
     0.868
Patl_1831
PFAM: amidohydrolase 2; KEGG: cps:CPS_1174 conserved hypothetical protein.
 
   
 0.723
Patl_1832
PFAM: short-chain dehydrogenase/reductase SDR 3-beta hydroxysteroid dehydrogenase/isomerase; KEGG: cps:CPS_1175 oxidoreductase, short-chain dehydrogenase/reductase family.
  
     0.440
Patl_1687
TIGRFAM: Twin-arginine translocation pathway signal; PFAM: aminotransferase, class V; KEGG: pae:PA2394 probable aminotransferase.
       0.405
Your Current Organism:
Pseudoalteromonas atlantica
NCBI taxonomy Id: 342610
Other names: P. atlantica T6c, Pseudoalteromonas atlantica T6c, Pseudoalteromonas atlantica str. T6c, Pseudoalteromonas atlantica strain T6c
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.