STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Patl_1700KEGG: cps:CPS_4821 hypothetical protein. (72 aa)    
Predicted Functional Partners:
Patl_1699
Hypothetical protein.
       0.773
Patl_1701
PFAM: ABC transporter, transmembrane region ABC transporter related; SMART: ATPase; KEGG: son:SO0754 ABC transporter, ATP-binding protein.
       0.773
Patl_1702
TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein; KEGG: cps:CPS_4684 GGDEF domain protein.
       0.705
Patl_1703
PFAM: protein of unknown function DUF330; KEGG: cps:CPS_3078 putative lipoprotein.
       0.648
Patl_1704
PFAM: Mammalian cell entry related; KEGG: cps:CPS_3077 putative paraquat-inducible protein B.
       0.648
Patl_1705
TIGRFAM: integral membrane protein, PqiA family; PFAM: Paraquat-inducible protein A; KEGG: cps:CPS_3076 integral membrane protein, PqiA family.
       0.648
Patl_1706
PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: vch:VC1041 phosphotyrosine protein phosphatase.
       0.472
Patl_1391
KEGG: pha:PSHAb0334 hypothetical protein.
  
     0.410
Your Current Organism:
Pseudoalteromonas atlantica
NCBI taxonomy Id: 342610
Other names: P. atlantica T6c, Pseudoalteromonas atlantica T6c, Pseudoalteromonas atlantica str. T6c, Pseudoalteromonas atlantica strain T6c
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.