STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Patl_1788Hypothetical protein. (137 aa)    
Predicted Functional Partners:
Patl_3602
KEGG: pha:PSHAa2594 hypothetical protein.
  
     0.772
Patl_1167
KEGG: cps:CPS_5028 hypothetical protein.
  
     0.770
Patl_3827
KEGG: cps:CPS_4478 hypothetical protein.
  
     0.768
Patl_1268
Response regulator receiver protein; PFAM: Tetratricopeptide TPR_2; SMART: Tetratricopeptide region; KEGG: pha:PSHAa1088 TPR motives.
  
     0.767
Patl_3104
PFAM: Anti-sigma-28 factor, FlgM; KEGG: cps:CPS_1472 negative regulator of flagellin synthesis FlgM.
  
   
 0.765
Patl_1279
PFAM: type IV pilus assembly PilZ; KEGG: pha:PSHAa0662 hypothetical protein.
  
     0.764
Patl_3833
KEGG: son:SO3813 hypothetical protein.
  
     0.764
Patl_3053
PFAM: protein of unknown function DUF115; KEGG: hch:HCH_04821 hypothetical protein.
  
     0.760
Patl_1724
KEGG: ilo:IL1521 hypothetical protein.
  
     0.757
Patl_2518
KEGG: cps:CPS_2250 putative lipoprotein.
  
     0.751
Your Current Organism:
Pseudoalteromonas atlantica
NCBI taxonomy Id: 342610
Other names: P. atlantica T6c, Pseudoalteromonas atlantica T6c, Pseudoalteromonas atlantica str. T6c, Pseudoalteromonas atlantica strain T6c
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.