STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Patl_1790Hypothetical protein. (245 aa)    
Predicted Functional Partners:
Patl_1789
Transcriptional regulator, LysR family; PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: ilo:IL1093 transcriptional regulator, LysR family.
       0.539
Patl_3099
TIGRFAM: flagellar basal-body rod protein FlgC; PFAM: flagellar basal body rod protein protein of unknown function DUF1078-like; KEGG: pha:PSHAa0770 flagellar biosynthesis; cell-proximal portion of basal-body rod.
   
   0.536
Patl_1788
Hypothetical protein.
     
 0.494
Patl_0395
Pyridine nucleotide-disulfide oxidoreductase dimerization region; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase glucose-inhibited division protein A pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: ilo:IL1160 mercuric reductase, membrane-associated; Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family.
  
  
 0.426
Your Current Organism:
Pseudoalteromonas atlantica
NCBI taxonomy Id: 342610
Other names: P. atlantica T6c, Pseudoalteromonas atlantica T6c, Pseudoalteromonas atlantica str. T6c, Pseudoalteromonas atlantica strain T6c
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.