STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Patl_1805Transcriptional regulator, HxlR family; PFAM: helix-turn-helix, HxlR type; KEGG: mlo:mlr1855 hypothetical protein. (236 aa)    
Predicted Functional Partners:
Patl_1804
PFAM: FAD linked oxidase-like; KEGG: sme:SMb21415 putative oxidoreductase, oxygen dependent, FAD-dependent protein.
 
     0.664
Patl_3304
PFAM: NAD-dependent epimerase/dehydratase; KEGG: vch:VCA1054 hypothetical protein.
  
  
 0.436
Patl_1803
PFAM: peptidase S15 peptidase S9, prolyl oligopeptidase active site region; KEGG: xcv:XCV0270 putative aminopeptidase precursor.
       0.401
Your Current Organism:
Pseudoalteromonas atlantica
NCBI taxonomy Id: 342610
Other names: P. atlantica T6c, Pseudoalteromonas atlantica T6c, Pseudoalteromonas atlantica str. T6c, Pseudoalteromonas atlantica strain T6c
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.