STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Patl_1900Transcriptional regulator, AraC family; PFAM: helix-turn-helix, AraC type; KEGG: vvy:VVA0468 AraC-type DNA-binding domain-containing protein. (316 aa)    
Predicted Functional Partners:
Patl_2256
PFAM: helix-turn-helix, AraC type AraC-type transcriptional regulator-like; KEGG: hch:HCH_03982 AraC-type DNA-binding domain-containing protein.
  
     0.705
Patl_1901
PFAM: YHS; KEGG: cps:CPS_3397 hypothetical protein.
 
     0.618
Patl_0818
PFAM: helix-turn-helix, AraC type; KEGG: bth:BT3667 transcriptional regulator.
  
     0.588
Patl_0314
Transcriptional regulator, AraC family with amidase-like domain; PFAM: helix-turn-helix, AraC type; KEGG: hch:HCH_00884 transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain.
  
   0.566
Patl_0104
PFAM: helix-turn-helix, AraC type; KEGG: pfl:PFL_5085 transcriptional regulator, AraC family.
  
   0.560
Patl_0773
Transcriptional regulator, AraC family; PFAM: helix-turn-helix, AraC type; KEGG: vvy:VVA1522 AraC-type DNA-binding domain-containing protein.
  
     0.552
Patl_4123
PFAM: regulatory protein, TetR; KEGG: son:SO3494 transcriptional regulator, TetR family.
  
     0.540
Patl_1157
Transcriptional regulator, AraC family; PFAM: helix-turn-helix, AraC type PAS fold-4; KEGG: rba:RB9879 probable transcription regulator.
  
   0.447
Patl_0208
PFAM: regulatory protein, TetR; KEGG: cps:CPS_1681 transcriptional regulator, TetR family.
  
     0.446
Patl_3778
Transcriptional regulator, AraC family with amidase-like domain; PFAM: helix-turn-helix, AraC type ThiJ/PfpI; KEGG: pha:PSHAa1381 transcriptional regulator.
  
   0.434
Your Current Organism:
Pseudoalteromonas atlantica
NCBI taxonomy Id: 342610
Other names: P. atlantica T6c, Pseudoalteromonas atlantica T6c, Pseudoalteromonas atlantica str. T6c, Pseudoalteromonas atlantica strain T6c
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.