STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Patl_1920TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein; KEGG: pha:PSHAb0368 putative GGDEF domain membrane protein. (346 aa)    
Predicted Functional Partners:
Patl_2248
PFAM: response regulator receiver metal-dependent phosphohydrolase, HD subdomain; SMART: Metal-dependent phosphohydrolase, HD region; KEGG: pha:PSHAa1150 response regulator CheB (receptor modification enzyme, protein-glutamate methylesterase).
 
    0.917
Patl_1538
PFAM: EAL response regulator receiver; KEGG: vvy:VVA0651 GGDEF family protein.
  
 0.795
Patl_0256
TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein EAL histidine kinase, HAMP region; KEGG: hch:HCH_01424 predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain.
  
    0.782
Patl_2196
Diguanylate cyclase/phosphodiesterase; PFAM: conserved hypothetical protein EAL; KEGG: pca:Pcar_2565 sensory box/GGDEF family protein.
 
    0.779
Patl_2246
Diguanylate cyclase/phosphodiesterase; PFAM: conserved hypothetical protein EAL; KEGG: ilo:IL1784 disrupted signaling protein (xGGDEF and EAL domains).
  
    0.777
Patl_3930
Diguanylate phosphodiesterase; PFAM: EAL; KEGG: pha:PSHAa2294 hypothetical protein.
  
    0.771
Patl_0480
TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein; KEGG: rru:Rru_A3374 putative diguanylate cyclase (GGDEF domain) with PAS/PAC sensor domain.
  
     0.770
Patl_4035
TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein EAL response regulator receiver; KEGG: cps:CPS_0394 response regulator/GGDEF/EAL domain protein.
  
    0.754
Patl_1079
TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein EAL histidine kinase, HAMP region; KEGG: tcx:Tcr_0208 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains).
 
  
 0.741
Patl_1785
TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein; KEGG: vvy:VV1542 GGDEF family protein.
  
    0.691
Your Current Organism:
Pseudoalteromonas atlantica
NCBI taxonomy Id: 342610
Other names: P. atlantica T6c, Pseudoalteromonas atlantica T6c, Pseudoalteromonas atlantica str. T6c, Pseudoalteromonas atlantica strain T6c
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