STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Patl_1990Putative GAF sensor protein; KEGG: pha:PSHAa1681 hypothetical protein. (154 aa)    
Predicted Functional Partners:
proQ
ProQ activator of osmoprotectant transporter ProP; RNA chaperone with significant RNA binding, RNA strand exchange and RNA duplexing activities; Belongs to the ProQ family.
  
  
 0.902
Patl_0921
PFAM: Methionine synthase, vitamin-B12 independent Cobalamin-independent synthase MetE-like; KEGG: pha:PSHAa1470 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase.
     
  0.900
metK
Methionine adenosyltransferase; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme.
     
  0.900
Patl_1993
C-terminal processing peptidase-1, Serine peptidase, MEROPS family S41A; KEGG: cps:CPS_2810 carboxyl-terminal protease Prc; TIGRFAM: carboxyl-terminal protease; PFAM: PDZ/DHR/GLGF peptidase S41; Belongs to the peptidase S41A family.
     
 0.884
Patl_1991
KEGG: cps:CPS_2812 hypothetical protein.
       0.785
Patl_1997
KEGG: pae:PA3051 hypothetical protein.
       0.693
Patl_1995
Transporter, NhaC family; PFAM: Na+/H+ antiporter NhaC; KEGG: pha:PSHAa1677 Na+/H+ antiporter NnaC; TC 2.A.35.
       0.621
Patl_1996
TIGRFAM: aminopeptidase N; PFAM: peptidase M1, membrane alanine aminopeptidase; KEGG: eca:ECA2539 aminopeptidase N.
       0.425
Patl_1994
PFAM: sodium:neurotransmitter symporter; KEGG: pha:PSHAa0859 sodium-dependent transporter.
       0.414
Patl_1989
PFAM: cytochrome c, class II; KEGG: cps:CPS_2799 cytochrome c'.
       0.412
Your Current Organism:
Pseudoalteromonas atlantica
NCBI taxonomy Id: 342610
Other names: P. atlantica T6c, Pseudoalteromonas atlantica T6c, Pseudoalteromonas atlantica str. T6c, Pseudoalteromonas atlantica strain T6c
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