STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Patl_1997KEGG: pae:PA3051 hypothetical protein. (73 aa)    
Predicted Functional Partners:
Patl_1996
TIGRFAM: aminopeptidase N; PFAM: peptidase M1, membrane alanine aminopeptidase; KEGG: eca:ECA2539 aminopeptidase N.
 
     0.914
Patl_1995
Transporter, NhaC family; PFAM: Na+/H+ antiporter NhaC; KEGG: pha:PSHAa1677 Na+/H+ antiporter NnaC; TC 2.A.35.
       0.791
Patl_1998
PFAM: protein of unknown function DUF1302; KEGG: pha:PSHAa1674 hypothetical protein.
       0.760
Patl_1999
PFAM: protein of unknown function DUF1329; KEGG: pha:PSHAa1673 hypothetical protein.
       0.725
proQ
ProQ activator of osmoprotectant transporter ProP; RNA chaperone with significant RNA binding, RNA strand exchange and RNA duplexing activities; Belongs to the ProQ family.
       0.702
Patl_1993
C-terminal processing peptidase-1, Serine peptidase, MEROPS family S41A; KEGG: cps:CPS_2810 carboxyl-terminal protease Prc; TIGRFAM: carboxyl-terminal protease; PFAM: PDZ/DHR/GLGF peptidase S41; Belongs to the peptidase S41A family.
       0.702
Patl_1990
Putative GAF sensor protein; KEGG: pha:PSHAa1681 hypothetical protein.
       0.693
Patl_1994
PFAM: sodium:neurotransmitter symporter; KEGG: pha:PSHAa0859 sodium-dependent transporter.
 
     0.593
Patl_2245
KEGG: son:SO4008 hypothetical protein.
  
     0.478
Patl_2000
KEGG: cps:CPS_2804 BNR repeat protein.
       0.474
Your Current Organism:
Pseudoalteromonas atlantica
NCBI taxonomy Id: 342610
Other names: P. atlantica T6c, Pseudoalteromonas atlantica T6c, Pseudoalteromonas atlantica str. T6c, Pseudoalteromonas atlantica strain T6c
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