STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Patl_1998PFAM: protein of unknown function DUF1302; KEGG: pha:PSHAa1674 hypothetical protein. (688 aa)    
Predicted Functional Partners:
Patl_1999
PFAM: protein of unknown function DUF1329; KEGG: pha:PSHAa1673 hypothetical protein.
 
  
 0.992
Patl_2000
KEGG: cps:CPS_2804 BNR repeat protein.
 
    0.970
Patl_2001
KEGG: cps:CPS_2803 putative membrane protein.
 
    0.957
Patl_1996
TIGRFAM: aminopeptidase N; PFAM: peptidase M1, membrane alanine aminopeptidase; KEGG: eca:ECA2539 aminopeptidase N.
       0.760
Patl_1997
KEGG: pae:PA3051 hypothetical protein.
       0.760
Patl_2007
KEGG: pha:PSHAa1664 hypothetical protein.
 
     0.743
Patl_3188
KEGG: cps:CPS_3529 hypothetical protein.
  
     0.729
Patl_1643
KEGG: cps:CPS_2564 hypothetical protein.
  
     0.724
Patl_2491
KEGG: pha:PSHAa1949 hypothetical protein.
  
     0.701
Patl_2002
PFAM: NAD-glutamate dehydrogenase; KEGG: pha:PSHAa1670 glutamate dehydrogenase.
       0.682
Your Current Organism:
Pseudoalteromonas atlantica
NCBI taxonomy Id: 342610
Other names: P. atlantica T6c, Pseudoalteromonas atlantica T6c, Pseudoalteromonas atlantica str. T6c, Pseudoalteromonas atlantica strain T6c
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.