STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Patl_2000KEGG: cps:CPS_2804 BNR repeat protein. (332 aa)    
Predicted Functional Partners:
Patl_2001
KEGG: cps:CPS_2803 putative membrane protein.
 
  
 0.988
Patl_1999
PFAM: protein of unknown function DUF1329; KEGG: pha:PSHAa1673 hypothetical protein.
 
  
 0.974
Patl_1998
PFAM: protein of unknown function DUF1302; KEGG: pha:PSHAa1674 hypothetical protein.
 
    0.967
pyrD
Dihydroorotate oxidase A; Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily.
     
 0.651
Patl_2002
PFAM: NAD-glutamate dehydrogenase; KEGG: pha:PSHAa1670 glutamate dehydrogenase.
       0.618
Patl_2491
KEGG: pha:PSHAa1949 hypothetical protein.
  
    0.567
Patl_2182
KEGG: pha:PSHAa1344 hypothetical protein.
 
    0.536
Patl_1996
TIGRFAM: aminopeptidase N; PFAM: peptidase M1, membrane alanine aminopeptidase; KEGG: eca:ECA2539 aminopeptidase N.
       0.504
Patl_1997
KEGG: pae:PA3051 hypothetical protein.
       0.490
rlmL
23S rRNA m(2)G-2445 methyltransferase; Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA. Belongs to the methyltransferase superfamily. RlmKL family.
 
     0.430
Your Current Organism:
Pseudoalteromonas atlantica
NCBI taxonomy Id: 342610
Other names: P. atlantica T6c, Pseudoalteromonas atlantica T6c, Pseudoalteromonas atlantica str. T6c, Pseudoalteromonas atlantica strain T6c
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.