STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Patl_2016KEGG: xac:XAC3992 hypothetical protein. (275 aa)    
Predicted Functional Partners:
Patl_0811
PFAM: protein of unknown function DUF1080; KEGG: ccr:CC1082 hypothetical protein.
 
     0.810
Patl_2015
KEGG: vpa:VP0925 deoxyguanosinetriphosphate triphosphohydrolase; TIGRFAM: putative deoxyguanosinetriphosphate triphosphohydrolase; PFAM: metal-dependent phosphohydrolase, HD subdomain; SMART: Metal-dependent phosphohydrolase, HD region; Belongs to the dGTPase family. Type 2 subfamily.
       0.718
Patl_1851
PFAM: protein of unknown function DUF1080; KEGG: nar:Saro_0775 protein of unknown function DUF1080.
 
     0.682
glgA
Glycogen synthase (ADP-glucose); Synthesizes alpha-1,4-glucan chains using ADP-glucose.
   
    0.664
Patl_0884
PFAM: protein of unknown function DUF1080; KEGG: ccr:CC1633 hypothetical protein.
  
     0.642
Patl_0817
KEGG: rba:RB12097 hypothetical protein-signal peptide prediction.
  
     0.590
Patl_2641
Gluconolactonase; PFAM: SMP-30/Gluconolaconase/LRE-like region; KEGG: rba:RB12740 gluconolactonase [precursor].
  
     0.564
Patl_2657
Endo-1,4-beta-xylanase; PFAM: glycoside hydrolase, family 10; KEGG: xcb:XC_4207 endo-1,4-beta-xylanase A.
  
     0.563
Patl_0798
PFAM: amidohydrolase 2; KEGG: rba:RB9860 hypothetical protein.
  
     0.544
Patl_2197
Glycogen/starch/alpha-glucan phosphorylase; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.
   
    0.524
Your Current Organism:
Pseudoalteromonas atlantica
NCBI taxonomy Id: 342610
Other names: P. atlantica T6c, Pseudoalteromonas atlantica T6c, Pseudoalteromonas atlantica str. T6c, Pseudoalteromonas atlantica strain T6c
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.