Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Patl_2017KEGG: eca:ECA3034 putative phosphohydrolase. (144 aa)    
Predicted Functional Partners:
Patl_2033
KEGG: sdy:SDY_2487 putative alpha helix protein.
 
     0.963
Patl_2015
KEGG: vpa:VP0925 deoxyguanosinetriphosphate triphosphohydrolase; TIGRFAM: putative deoxyguanosinetriphosphate triphosphohydrolase; PFAM: metal-dependent phosphohydrolase, HD subdomain; SMART: Metal-dependent phosphohydrolase, HD region; Belongs to the dGTPase family. Type 2 subfamily.
  
 
  0.634
surE
5'-nucleotidase / 3'-nucleotidase; Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates; Belongs to the SurE nucleotidase family.
     
 0.554
Patl_3706
TIGRFAM: MazG family protein; PFAM: MazG nucleotide pyrophosphohydrolase; KEGG: hch:HCH_01808 predicted pyrophosphatase.
  
  
  0.527
Patl_3565
PFAM: 5'-Nucleotidase-like; KEGG: mag:amb3606 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterase; Belongs to the 5'-nucleotidase family.
     
 0.503
Patl_2016
KEGG: xac:XAC3992 hypothetical protein.
       0.495
Patl_0216
KEGG: vpa:VP2813 hypothetical protein.
  
     0.483
gmk
Guanylate kinase; Essential for recycling GMP and indirectly, cGMP.
   
 
  0.446
cmk
KEGG: cps:CPS_2334 cytidylate kinase; TIGRFAM: cytidylate kinase; PFAM: cytidylate kinase region.
     
 0.442
tdk
PFAM: thymidine kinase; KEGG: vvy:VV1363 thymidine kinase.
    
  0.441
Your Current Organism:
Pseudoalteromonas atlantica
NCBI taxonomy Id: 342610
Other names: P. atlantica T6c, Pseudoalteromonas atlantica T6c, Pseudoalteromonas atlantica str. T6c, Pseudoalteromonas atlantica strain T6c
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