STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Patl_2057Transcriptional regulator, RpiR family; PFAM: helix-turn-helix protein RpiR sugar isomerase (SIS); KEGG: eca:ECA3496 putative transcriptional regulator. (272 aa)    
Predicted Functional Partners:
Patl_2055
PFAM: Amidase; KEGG: rpb:RPB_2085 amidase.
 
     0.664
Patl_2051
Amidase, hydantoinase/carbamoylase family; KEGG: yps:YPTB0871 N-carbamoyl-L-amino acid amidohydrolase; TIGRFAM: amidase, hydantoinase/carbamoylase family; PFAM: peptidase M20 peptidase dimerisation.
 
     0.598
Patl_2054
Gamma-glutamyltransferase 2, Threonine peptidase, MEROPS family T03; PFAM: gamma-glutamyltranspeptidase; KEGG: vch:VCA0558 gamma-glutamyltranspeptidase, putative.
 
     0.568
Patl_2056
Fumarase; PFAM: fumarate lyase; KEGG: pfl:PFL_0907 fumarate hydratase, class II.
       0.482
Patl_0549
Methylthioadenosine nucleosidase; PFAM: purine and other phosphorylases, family 1; KEGG: ccr:CC2266 5'-methylthioadenosine nucleosidase / S-adenosylhomocysteine nucleosidase.
  
     0.438
Patl_2052
PFAM: aminotransferase, class V; KEGG: eca:ECA3491 purine catabolism protein.
 
     0.432
Patl_0774
PFAM: protein of unknown function DUF6, transmembrane; KEGG: vvu:VV21027 permease of the drug/metabolite transporter (DMT) superfamily.
  
     0.430
Patl_0125
Asparaginase; KEGG: xcb:XC_1195 asparaginase; TIGRFAM: Twin-arginine translocation pathway signal; PFAM: peptidase T2, asparaginase 2.
  
    0.424
Patl_2732
PFAM: isochorismatase hydrolase; KEGG: nph:NP6214A homolog 1 to N-carbamoylsarcosine amidase.
  
  
 0.424
Patl_3646
Phosphomannose isomerase-like protein; KEGG: tte:TTE1751 phosphomannose isomerase.
 
  
 0.401
Your Current Organism:
Pseudoalteromonas atlantica
NCBI taxonomy Id: 342610
Other names: P. atlantica T6c, Pseudoalteromonas atlantica T6c, Pseudoalteromonas atlantica str. T6c, Pseudoalteromonas atlantica strain T6c
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