STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Patl_2091TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC copper-translocating P-type ATPase heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase-like hydrolase Heavy metal transport/detoxification protein E1-E2 ATPase-associated region; KEGG: pha:PSHAa1011 P-type ATPase, copper transporting, phophatase-like domain. (750 aa)    
Predicted Functional Partners:
Patl_2092
KEGG: pha:PSHAa1012 hypothetical protein.
 
    0.896
Patl_2090
PFAM: regulatory protein, MerR; KEGG: pha:PSHAa1010 transcriptional regulator.
 
  
 0.872
Patl_3398
Transcriptional regulator, ArsR family; PFAM: regulatory protein, ArsR; KEGG: pha:PSHAb0181 putative arsenic resistance operon regulator.
 
  
 0.436
Patl_2089
TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein response regulator receiver; KEGG: cvi:CV3504 probable two-component response regulator.
       0.433
Patl_2098
TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: ava:Ava_1002 cation efflux protein; Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family.
 
 
 0.429
Patl_1472
PFAM: zinc/iron permease; KEGG: dar:Daro_1606 zinc transporter ZIP.
 
   
 0.425
Patl_1058
PFAM: iron permease FTR1; KEGG: ilo:IL0111 high-affinity Fe2+/Pb2+ permease.
 
   
 0.412
Patl_3338
TIGRFAM: Glutaredoxin-family domain protein; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen glutaredoxin Redoxin; KEGG: pha:PSHAa0759 peroxiredoxin/glutaredoxin protein.
   
 
 0.412
Your Current Organism:
Pseudoalteromonas atlantica
NCBI taxonomy Id: 342610
Other names: P. atlantica T6c, Pseudoalteromonas atlantica T6c, Pseudoalteromonas atlantica str. T6c, Pseudoalteromonas atlantica strain T6c
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