STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Patl_2099KEGG: pha:PSHAa2877 hypothetical protein. (101 aa)    
Predicted Functional Partners:
Patl_2100
PFAM: heat shock protein DnaJ-like chaperone DnaJ-like; KEGG: ppu:PP4848 curved-DNA-binding protein, DnaJ family.
 
 
 0.996
dnaJ
Chaperone protein DnaJ; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, D [...]
  
 
 0.809
Patl_1585
PFAM: heat shock protein DnaJ-like; KEGG: ilo:IL1722 DnaJ-related protein.
  
 
 0.778
Patl_1295
KEGG: rba:RB641 sensory histidine protein kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver GAF ATP-binding region, ATPase-like histidine kinase A-like PAS fold-3 PAS fold-4 PAS fold; SMART: PAS PAC motif.
   
 
 0.508
Patl_2101
KEGG: cps:CPS_2621 cytochrome c family protein.
       0.472
Patl_1926
Hypothetical protein.
  
     0.469
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.458
Patl_1750
KEGG: nmu:Nmul_A2207 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver ATP-binding region, ATPase-like histidine kinase A-like PAS fold-4 PAS fold; SMART: PAS.
   
 
 0.446
Patl_2818
Periplasmic sensor hybrid histidine kinase; PFAM: response regulator receiver ATP-binding region, ATPase-like histidine kinase A-like; KEGG: vch:VC1349 sensory box sensor histidine kinase/response regulator.
   
 
 0.431
Patl_3604
PAS/PAC sensor hybrid histidine kinase; KEGG: hch:HCH_00794 FOG: PAS/PAC domain; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver ATP-binding region, ATPase-like histidine kinase A-like PAS fold-3 PAS fold-4 PAS fold; SMART: PAS PAC motif.
   
 
 0.426
Your Current Organism:
Pseudoalteromonas atlantica
NCBI taxonomy Id: 342610
Other names: P. atlantica T6c, Pseudoalteromonas atlantica T6c, Pseudoalteromonas atlantica str. T6c, Pseudoalteromonas atlantica strain T6c
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