STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Patl_2139PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pfo:Pfl_3419 short-chain dehydrogenase/reductase SDR. (254 aa)    
Predicted Functional Partners:
Patl_2140
PFAM: NAD-dependent epimerase/dehydratase short-chain dehydrogenase/reductase SDR; KEGG: hch:HCH_06815 short-chain alcohol dehydrogenase-like protein.
 
    
0.745
Patl_2141
PFAM: acyl-CoA dehydrogenase-like; KEGG: psp:PSPPH_0495 acyl-CoA dehydrogenase family protein.
 
  0.646
Patl_2123
[Acyl-carrier-protein] S-malonyltransferase; TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: acyl transferase region; KEGG: msu:MS1873 (acyl-carrier-protein) S-malonyltransferase.
 
 
 0.587
Patl_1811
PFAM: Phosphoglycerate mutase; KEGG: bur:Bcep18194_B3039 phosphoglycerate/bisphosphoglycerate mutase.
  
     0.507
Patl_0633
PFAM: Phosphoglycerate mutase; KEGG: aci:ACIAD1884 putative phosphoglycerate mutase related protein.
  
     0.485
Patl_2142
Transcriptional regulator, AraC family with amidase-like domain; PFAM: helix-turn-helix, AraC type ThiJ/PfpI; KEGG: hch:HCH_00884 transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain.
 
    0.465
Patl_2935
KEGG: pha:PSHAb0355 putative acyl-CoA thioesterase, TesB family.
  
  
  0.451
Patl_3429
PFAM: Strictosidine synthase; KEGG: pae:PA1293 hypothetical protein.
  
    0.445
Patl_0632
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: ilo:IL1485 short chain dehydrogenase family protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 
   0.418
Patl_0587
PFAM: Enoyl-CoA hydratase/isomerase; KEGG: pae:PA1748 probable enoyl-CoA hydratase/isomerase.
  
 
  0.416
Your Current Organism:
Pseudoalteromonas atlantica
NCBI taxonomy Id: 342610
Other names: P. atlantica T6c, Pseudoalteromonas atlantica T6c, Pseudoalteromonas atlantica str. T6c, Pseudoalteromonas atlantica strain T6c
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