STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Patl_2144Beta-galactosidase; PFAM: Glycoside hydrolase, family 42-like Beta-galactosidase trimerisation; KEGG: tma:TM1195 beta-galactosidase. (652 aa)    
Predicted Functional Partners:
Patl_3687
PFAM: glycoside hydrolase, clan GH-D; KEGG: eli:ELI_03515 alpha-galactosidase.
 
  
 0.978
Patl_2682
Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer.
  
 
 0.907
Patl_3534
Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer.
  
 
 0.907
Patl_0821
PFAM: glycoside hydrolase, family 42, domain 5, loop region glycoside hydrolase family 2, immunoglobulin-like beta-sandwich glycoside hydrolase family 2, TIM barrel glycoside hydrolase family 2, sugar binding; KEGG: tma:TM1193 beta-galactosidase.
 
 
 0.762
Patl_4065
Beta-galactosidase; PFAM: glycoside hydrolase, family 42, domain 5, loop region glycoside hydrolase family 2, immunoglobulin-like beta-sandwich glycoside hydrolase family 2, TIM barrel glycoside hydrolase family 2, sugar binding; KEGG: tma:TM1193 beta-galactosidase.
 
 
 0.759
Patl_0832
PFAM: glycoside hydrolase family 2, immunoglobulin-like beta-sandwich glycoside hydrolase family 2, TIM barrel glycoside hydrolase family 2, sugar binding; KEGG: bth:BT0983 beta-galactosidase; Belongs to the glycosyl hydrolase 2 family.
 
 
 0.756
Patl_0804
PFAM: glycoside hydrolase family 2, immunoglobulin-like beta-sandwich glycoside hydrolase family 2, TIM barrel glycoside hydrolase family 2, sugar binding; KEGG: xcv:XCV4356 beta-galactosidase; Belongs to the glycosyl hydrolase 2 family.
 
 
 0.754
Patl_2572
Carbohydrate ABC transporter substrate-binding protein, CUT1 family; PFAM: extracellular solute-binding protein, family 1; KEGG: hch:HCH_00071 ABC-type sugar transport system, periplasmic component; TC 3.A.1.1.-.
 
   
 0.752
Patl_3985
Carbohydrate ABC transporter substrate-binding protein, CUT1 family; PFAM: extracellular solute-binding protein, family 1; KEGG: hch:HCH_00071 ABC-type sugar transport system, periplasmic component; TC 3.A.1.1.-.
 
   
 0.742
Patl_0128
Beta-mannosidase; PFAM: glycoside hydrolase family 2, immunoglobulin-like beta-sandwich glycoside hydrolase family 2, sugar binding; KEGG: bfr:BF1733 beta-mannosidase.
 
 
 0.549
Your Current Organism:
Pseudoalteromonas atlantica
NCBI taxonomy Id: 342610
Other names: P. atlantica T6c, Pseudoalteromonas atlantica T6c, Pseudoalteromonas atlantica str. T6c, Pseudoalteromonas atlantica strain T6c
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