STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Patl_2162Mannosyl-3-phosphoglycerate phosphatase family; KEGG: cps:CPS_0508 HAD-superfamily hydrolase, subfamily IIB; TIGRFAM: HAD-superfamily hydrolase, subfamily IIB mannosyl-3-phosphoglycerate phosphatase family; PFAM: Haloacid dehalogenase-like hydrolase, type 3. (274 aa)    
Predicted Functional Partners:
Patl_2161
KEGG: cps:CPS_0521 hypothetical protein.
     0.915
Patl_2163
KEGG: hch:HCH_00270 glycosyltransferase involved in cell wall biogenesis.
 
     0.914
Patl_2164
PFAM: alpha amylase, catalytic region; SMART: Alpha amylase, catalytic subdomain; KEGG: cps:CPS_0506 putative sucrose phosphorylase.
 
     0.893
Patl_3731
PFAM: Endonuclease/exonuclease/phosphatase; KEGG: rru:Rru_A0201 endonuclease/exonuclease/phosphatase.
   
    0.418
Your Current Organism:
Pseudoalteromonas atlantica
NCBI taxonomy Id: 342610
Other names: P. atlantica T6c, Pseudoalteromonas atlantica T6c, Pseudoalteromonas atlantica str. T6c, Pseudoalteromonas atlantica strain T6c
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.