STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Patl_2175PFAM: UDP-glucose/GDP-mannose dehydrogenase NADP oxidoreductase, coenzyme F420-dependent 6-phosphogluconate dehydrogenase, NAD-binding; KEGG: ret:RHE_CH02433 probable 3-hydroxyisobutyrate dehydrogenase protein. (290 aa)    
Predicted Functional Partners:
Patl_2088
PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: ana:alr0058 D-lactate dehydrogenase.
 
   
 0.652
Patl_2677
Alkylhydroperoxidase like protein, AhpD family; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family.
  
  
 0.562
Patl_2176
PFAM: glutathione peroxidase; KEGG: gka:GK1785 glutathione peroxidase; Belongs to the glutathione peroxidase family.
       0.537
Patl_2174
KEGG: sdn:Sden_3510 hypothetical protein.
       0.474
Patl_2687
TIGRFAM: Twin-arginine translocation pathway signal; PFAM: Xylose isomerase-like TIM barrel; KEGG: rba:RB12073 hypothetical protein; Belongs to the hyi family.
  
  
 0.417
Patl_0950
PFAM: Enoyl-CoA hydratase/isomerase; KEGG: cps:CPS_1607 enoyl-CoA hydratase/isomerase family protein.
 
  
 0.402
Your Current Organism:
Pseudoalteromonas atlantica
NCBI taxonomy Id: 342610
Other names: P. atlantica T6c, Pseudoalteromonas atlantica T6c, Pseudoalteromonas atlantica str. T6c, Pseudoalteromonas atlantica strain T6c
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