STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Patl_2182KEGG: pha:PSHAa1344 hypothetical protein. (872 aa)    
Predicted Functional Partners:
Patl_2007
KEGG: pha:PSHAa1664 hypothetical protein.
  
     0.761
Patl_0241
PFAM: type II secretion system protein N; KEGG: pha:PSHAa0242 general secretion pathway protein N.
  
     0.750
Patl_3190
KEGG: son:SO1612 hypothetical protein.
  
     0.731
Patl_1724
KEGG: ilo:IL1521 hypothetical protein.
  
     0.730
Patl_1643
KEGG: cps:CPS_2564 hypothetical protein.
  
     0.729
Patl_4058
KEGG: cps:CPS_1542 hypothetical protein.
  
     0.723
Patl_3195
KEGG: ilo:IL0859 SmpA/OmlA family lipoprotein.
  
     0.722
Patl_0506
KEGG: son:SO1658 hypothetical protein.
  
     0.719
Patl_1429
KEGG: pha:PSHAa1664 hypothetical protein.
  
     0.717
Patl_2985
PFAM: TPR repeat; SMART: Tetratricopeptide region; KEGG: cps:CPS_3751 TPR domain protein.
  
   
 0.714
Your Current Organism:
Pseudoalteromonas atlantica
NCBI taxonomy Id: 342610
Other names: P. atlantica T6c, Pseudoalteromonas atlantica T6c, Pseudoalteromonas atlantica str. T6c, Pseudoalteromonas atlantica strain T6c
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.