STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Patl_2196Diguanylate cyclase/phosphodiesterase; PFAM: conserved hypothetical protein EAL; KEGG: pca:Pcar_2565 sensory box/GGDEF family protein. (440 aa)    
Predicted Functional Partners:
Patl_3747
KEGG: vch:VC2369 sensor histidine kinase FexB; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver ATP-binding region, ATPase-like histidine kinase A-like Hpt PAS fold-3 PAS fold-4 PAS fold; SMART: PAS PAC motif.
 
 
 0.894
Patl_2581
Diguanylate cyclase with PAS/PAC sensor; KEGG: hch:HCH_00494 predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain; TIGRFAM: PAS sensor protein diguanylate cyclase; PFAM: conserved hypothetical protein histidine kinase, HAMP region PAS fold-4; SMART: PAS.
 
 0.849
Patl_3543
Hpt sensor hybrid histidine kinase; PFAM: response regulator receiver ATP-binding region, ATPase-like histidine kinase A-like Hpt Two component regulator propeller Two component regulator three Y; KEGG: cps:CPS_0755 GGDEF domain protein.
 
  
 0.838
Patl_2678
TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein GAF; KEGG: dar:Daro_3445 PAS:GGDEF.
  
 0.837
Patl_0398
Diguanylate cyclase with PAS/PAC sensor; KEGG: son:SO1695 sensory box/GGDEF family protein; TIGRFAM: PAS sensor protein diguanylate cyclase; PFAM: conserved hypothetical protein; SMART: PAS.
 
 0.833
Patl_0507
Multi-sensor hybrid histidine kinase; PFAM: response regulator receiver ATP-binding region, ATPase-like histidine kinase A-like Hpt Diverse 7TM receptor, transmembrane region; KEGG: son:SO3457 sensor histidine kinase/response regulator.
 
  
 0.827
Patl_4293
Multi-sensor hybrid histidine kinase; PFAM: response regulator receiver ATP-binding region, ATPase-like histidine kinase A-like Hpt Diverse 7TM receptor, transmembrane region; KEGG: cps:CPS_4481 sensor histidine kinase/response regulator.
 
  
 0.827
Patl_2662
Diguanylate cyclase/phosphodiesterase; PFAM: conserved hypothetical protein EAL histidine kinase, HAMP region; KEGG: eba:ebA1787 hypothetical protein.
 
  
 0.817
Patl_0006
TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein histidine kinase, HAMP region; KEGG: tdn:Tmden_2088 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s).
  
    0.797
Patl_2310
Diguanylate cyclase; KEGG: ppr:PBPRB0205 hypothetical FOG: GGDEF domain; TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein TPR repeat Tetratricopeptide TPR_2; SMART: Tetratricopeptide region.
 
  
 0.797
Your Current Organism:
Pseudoalteromonas atlantica
NCBI taxonomy Id: 342610
Other names: P. atlantica T6c, Pseudoalteromonas atlantica T6c, Pseudoalteromonas atlantica str. T6c, Pseudoalteromonas atlantica strain T6c
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.