STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Patl_2225PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: ccr:CC2660 TonB-dependent receptor. (812 aa)    
Predicted Functional Partners:
Patl_2226
Purine nucleoside permease; PFAM: protein of unknown function DUF985 purine nucleoside permease; KEGG: gox:GOX1437 purine nucleoside permease.
 
     0.870
Patl_2222
PFAM: adenosine/AMP deaminase; KEGG: lpf:lpl0535 hypothetical protein.
 
     0.715
Patl_3305
KEGG: ccr:CC1285 hypothetical protein.
  
     0.696
Patl_3414
PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: ilo:IL0069 outer membrane protein.
  
    0.687
Patl_3818
PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: cps:CPS_0993 TonB-dependent receptor.
  
  
 0.666
Patl_3617
KEGG: hch:HCH_01598 hypothetical protein.
  
     0.631
Patl_3413
KEGG: cps:CPS_4883 hypothetical protein.
 
  
 0.626
Patl_1938
PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: cps:CPS_0993 TonB-dependent receptor.
  
    0.617
Patl_0549
Methylthioadenosine nucleosidase; PFAM: purine and other phosphorylases, family 1; KEGG: ccr:CC2266 5'-methylthioadenosine nucleosidase / S-adenosylhomocysteine nucleosidase.
  
     0.615
Patl_0940
PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: ccr:CC3436 TonB-dependent receptor.
  
    0.595
Your Current Organism:
Pseudoalteromonas atlantica
NCBI taxonomy Id: 342610
Other names: P. atlantica T6c, Pseudoalteromonas atlantica T6c, Pseudoalteromonas atlantica str. T6c, Pseudoalteromonas atlantica strain T6c
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.