STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Patl_2248PFAM: response regulator receiver metal-dependent phosphohydrolase, HD subdomain; SMART: Metal-dependent phosphohydrolase, HD region; KEGG: pha:PSHAa1150 response regulator CheB (receptor modification enzyme, protein-glutamate methylesterase). (331 aa)    
Predicted Functional Partners:
Patl_3835
TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein; KEGG: pha:PSHAa1211 sensory box/GGDEF protein.
 
    0.936
Patl_2249
Multi-sensor hybrid histidine kinase; KEGG: pha:PSHAa1151 two-component member protein; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver ATP-binding region, ATPase-like histidine kinase A-like MHYT PAS fold-3 PAS fold; SMART: PAS PAC motif.
 
 0.931
Patl_2703
TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein; KEGG: pha:PSHAb0368 putative GGDEF domain membrane protein.
 
    0.924
Patl_1920
TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein; KEGG: pha:PSHAb0368 putative GGDEF domain membrane protein.
 
    0.917
Patl_2097
PAS/PAC sensor signal transduction histidine kinase; KEGG: mlo:mll6607 two-component, nitrogen fixation sensor protein FixL; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase-like histidine kinase A-like PAS fold-3 PAS fold-4 PAS fold; SMART: PAS.
 
 
 0.887
Patl_0443
TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein; KEGG: ilo:IL2366 signaling protein with a acyltransferase and GGDEF domains.
 
    0.840
Patl_1702
TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein; KEGG: cps:CPS_4684 GGDEF domain protein.
 
    0.840
Patl_2664
GAF sensor hybrid histidine kinase; PFAM: response regulator receiver GAF ATP-binding region, ATPase-like histidine kinase A-like PAS fold-3; SMART: PAC motif; KEGG: dar:Daro_1614 PAS.
 
 0.798
Patl_4152
Histidine kinase; PFAM: response regulator receiver ATP-binding region, ATPase-like histidine kinase A-like; KEGG: pha:PSHAa2394 two-component sensor histidine kinase and response regulator hybrid.
 
 0.787
Patl_0398
Diguanylate cyclase with PAS/PAC sensor; KEGG: son:SO1695 sensory box/GGDEF family protein; TIGRFAM: PAS sensor protein diguanylate cyclase; PFAM: conserved hypothetical protein; SMART: PAS.
 
 0.731
Your Current Organism:
Pseudoalteromonas atlantica
NCBI taxonomy Id: 342610
Other names: P. atlantica T6c, Pseudoalteromonas atlantica T6c, Pseudoalteromonas atlantica str. T6c, Pseudoalteromonas atlantica strain T6c
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.