STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Patl_2256PFAM: helix-turn-helix, AraC type AraC-type transcriptional regulator-like; KEGG: hch:HCH_03982 AraC-type DNA-binding domain-containing protein. (301 aa)    
Predicted Functional Partners:
Patl_1900
Transcriptional regulator, AraC family; PFAM: helix-turn-helix, AraC type; KEGG: vvy:VVA0468 AraC-type DNA-binding domain-containing protein.
  
     0.705
Patl_2257
PFAM: MscS Mechanosensitive ion channel; KEGG: noc:Noc_2151 MscS mechanosensitive ion channel.
       0.682
Patl_2255
PFAM: aldo/keto reductase; KEGG: eca:ECA0736 putative aldo/keto reductase.
 
     0.674
Patl_0773
Transcriptional regulator, AraC family; PFAM: helix-turn-helix, AraC type; KEGG: vvy:VVA1522 AraC-type DNA-binding domain-containing protein.
  
     0.562
Your Current Organism:
Pseudoalteromonas atlantica
NCBI taxonomy Id: 342610
Other names: P. atlantica T6c, Pseudoalteromonas atlantica T6c, Pseudoalteromonas atlantica str. T6c, Pseudoalteromonas atlantica strain T6c
Server load: medium (42%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.