STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Patl_2277PFAM: Biopolymer transport protein ExbD/TolR; KEGG: sbo:SBO_2999 ExbD; TC 2.C.1.1.1. (139 aa)    
Predicted Functional Partners:
Patl_2279
Outer membrane transport energization protein ExbB; PFAM: MotA/TolQ/ExbB proton channel; KEGG: jan:Jann_2130 MotA/TolQ/ExbB proton channel; TC 2.C.1.1.1.
 
 
 0.967
Patl_2276
Outer membrane transport energization protein TonB; TIGRFAM: TonB family protein; KEGG: pst:PSPTO0067 tonB protein; TC 2.C.1.1.1.
 
 
 0.924
Patl_2278
KEGG: jan:Jann_2129 biopolymer transport protein ExbD/TolR; TC 2.C.1.1.1.
 
     0.821
Patl_2275
PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: rpa:RPA3480 putative outer membrane receptor for iron transport.
  
  
 0.803
tolQ
Cell division and transport-associated protein TolQ; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
 
 
 0.747
Patl_2988
PFAM: MotA/TolQ/ExbB proton channel; KEGG: cps:CPS_3754 biopolymer transport ExbB protein; TC 2.C.1.1.1.
 
 
 0.690
Patl_1061
Outer membrane transport energization protein ExbB; PFAM: MotA/TolQ/ExbB proton channel; KEGG: ilo:IL2118 TonB system biopolymer transport component; TC 2.C.1.1.1.
 
 
 0.686
Patl_2989
Outer membrane transport energization protein ExbB; PFAM: MotA/TolQ/ExbB proton channel; KEGG: ilo:IL1858 TonB system biopolymer transport component; TC 2.C.1.1.1.
 
 
 0.667
Patl_1062
Outer membrane transport energization protein ExbB; PFAM: MotA/TolQ/ExbB proton channel; KEGG: ilo:IL2117 TonB system biopolymer transport component; TC 2.C.1.1.1.
 
 
 0.660
Patl_2987
PFAM: Biopolymer transport protein ExbD/TolR; KEGG: ilo:IL1856 biopolymer transport protein; TC 2.C.1.1.1.
 
     0.654
Your Current Organism:
Pseudoalteromonas atlantica
NCBI taxonomy Id: 342610
Other names: P. atlantica T6c, Pseudoalteromonas atlantica T6c, Pseudoalteromonas atlantica str. T6c, Pseudoalteromonas atlantica strain T6c
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