STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Patl_2318KEGG: cps:CPS_3207 hypothetical protein. (441 aa)    
Predicted Functional Partners:
Patl_2316
PFAM: peptidase C39, bacteriocin processing; KEGG: cps:CPS_3210 peptidase, C39 family.
 
     0.802
Patl_1958
KEGG: cps:CPS_1639 hypothetical protein.
  
     0.539
Patl_2313
PFAM: transcriptional regulatory protein-like; KEGG: cps:CPS_3214 putative transcriptional regulator.
  
     0.428
Patl_2319
PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: cps:CPS_2088 TonB-dependent receptor.
       0.407
Your Current Organism:
Pseudoalteromonas atlantica
NCBI taxonomy Id: 342610
Other names: P. atlantica T6c, Pseudoalteromonas atlantica T6c, Pseudoalteromonas atlantica str. T6c, Pseudoalteromonas atlantica strain T6c
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.