STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Patl_2358PFAM: Ig-like, group 1; KEGG: yps:YPTB3789 possible bacterial Ig-like domain (group 1). (727 aa)    
Predicted Functional Partners:
Patl_3362
AAA ATPase containing von Willebrand factor type A (vWA) domain-like protein; KEGG: pha:PSHAa2076 hypothetical protein; membrane protein.
 
 
 
 0.803
Patl_3632
KEGG: son:SO3645 hypothetical protein.
  
     0.758
Patl_1815
KEGG: son:SO3645 hypothetical protein.
  
     0.756
Patl_1921
KEGG: son:SO3645 hypothetical protein.
  
     0.755
Patl_3257
KEGG: sha:SH0326 hypothetical protein.
 
   
 0.744
Patl_0792
KEGG: pha:PSHAa1003 hypothetical protein.
 
    0.743
Patl_3602
KEGG: pha:PSHAa2594 hypothetical protein.
  
     0.725
Patl_1167
KEGG: cps:CPS_5028 hypothetical protein.
  
     0.724
Patl_0419
PFAM: TPR repeat Tetratricopeptide TPR_4 Tetratricopeptide TPR_2; SMART: Tetratricopeptide region; KEGG: cps:CPS_0309 TPR domain protein.
 
 
 
 0.714
Patl_2518
KEGG: cps:CPS_2250 putative lipoprotein.
  
     0.714
Your Current Organism:
Pseudoalteromonas atlantica
NCBI taxonomy Id: 342610
Other names: P. atlantica T6c, Pseudoalteromonas atlantica T6c, Pseudoalteromonas atlantica str. T6c, Pseudoalteromonas atlantica strain T6c
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.