STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Patl_2378TIGRFAM: Pseudouridine synthase, Rsu; PFAM: pseudouridine synthase; KEGG: vch:VC1140 pseudouridine synthase family 1 protein; Belongs to the pseudouridine synthase RsuA family. (192 aa)    
Predicted Functional Partners:
mnmA
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.
     
 0.838
hflD
PFAM: protein of unknown function DUF489; KEGG: vch:VC1127 hypothetical protein.
       0.827
Patl_2381
KEGG: pha:PSHAa1692 adenylosuccinate lyase; TIGRFAM: adenylosuccinate lyase; PFAM: fumarate lyase Adenylosuccinate lyase-like; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.
       0.817
Patl_2377
Isocitrate dehydrogenase, NADP-dependent; KEGG: eba:ebA832 isocitrate dehydrogenase isozyme 2, monomeric type, NADP-specific; TIGRFAM: isocitrate dehydrogenase, NADP-dependent; PFAM: Isocitrate dehydrogenase NADP-dependent, monomeric type; Belongs to the monomeric-type IDH family.
       0.768
der
Small GTP-binding protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.
 
  
 0.668
Patl_2648
TIGRFAM: exodeoxyribonuclease III exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase; KEGG: ppr:PBPRA2737 putative exodeoxyribonuclease III.
  
    0.661
Patl_2451
PFAM: protein of unknown function UPF0005; KEGG: cps:CPS_2350 putative membrane protein; Belongs to the BI1 family.
       0.578
Patl_2452
PFAM: DsrE-like protein; KEGG: plu:plu0426 putative uncharacterized protein involved in oxidation of intracellular sulfur.
       0.578
cmk
KEGG: cps:CPS_2334 cytidylate kinase; TIGRFAM: cytidylate kinase; PFAM: cytidylate kinase region.
  
  
 0.568
Patl_2383
PFAM: Cupin 4 Transcription factor jumonji; SMART: Transcription factor jumonji/aspartyl beta-hydroxylase; KEGG: stm:STM1229 putative cytoplasmic protein.
 
    0.529
Your Current Organism:
Pseudoalteromonas atlantica
NCBI taxonomy Id: 342610
Other names: P. atlantica T6c, Pseudoalteromonas atlantica T6c, Pseudoalteromonas atlantica str. T6c, Pseudoalteromonas atlantica strain T6c
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