STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Patl_2402PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: cps:CPS_4213 putative ferric aerobactin receptor. (724 aa)    
Predicted Functional Partners:
Patl_2403
PFAM: PepSY-associated TM helix; KEGG: pha:PSHAb0287 putative uncharacterized iron-regulated membrane protein.
 
     0.888
Patl_2728
KEGG: cps:CPS_2637 hypothetical protein.
  
     0.554
Patl_1064
Outer membrane transport energization protein TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
  
 
 0.533
Patl_0311
TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: nar:Saro_1823 TonB-dependent siderophore receptor.
 
  
 0.506
Patl_3539
Outer membrane transport energization protein TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
  
 
 0.496
Patl_3776
TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: pha:PSHAa1584 TonB-dependent receptor for ferrichrome transport.
 
  
 0.487
Patl_2986
Outer membrane transport energization protein TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
  
 
 0.483
Patl_2401
Hypothetical protein.
       0.475
Patl_3286
TIGRFAM: TonB family protein; KEGG: cps:CPS_4804 TonB domain protein.
  
   0.475
Patl_0785
TonB-dependent receptor, plug; PFAM: TonB-dependent receptor Secretin/TonB, short N-terminal TonB-dependent receptor, plug; KEGG: nar:Saro_0250 TonB-dependent receptor.
  
  
 0.457
Your Current Organism:
Pseudoalteromonas atlantica
NCBI taxonomy Id: 342610
Other names: P. atlantica T6c, Pseudoalteromonas atlantica T6c, Pseudoalteromonas atlantica str. T6c, Pseudoalteromonas atlantica strain T6c
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