STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Patl_2500KEGG: vvy:VVA0553 hypothetical protein. (215 aa)    
Predicted Functional Partners:
Patl_1165
KEGG: ppr:PBPRB0391 conserved hypothetical protein.
  
     0.573
Patl_2501
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: mca:MCA2986 pteridine reductase.
 
     0.554
thrS
Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase; Catalyzes the attachment of threonine to tRNA(Thr) in a two- step reaction: L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr).
       0.516
Patl_2502
Hypothetical protein; KEGG: ppr:PBPRA1486 conserved hypothetical protein.
       0.487
Patl_1924
Amino acid ABC transporter substrate-binding protein, PAAT family; KEGG: dvu:DVU0852 extracellular solute-binding protein, putative; TC 3.A.1.3.-.
  
     0.465
Patl_2935
KEGG: pha:PSHAb0355 putative acyl-CoA thioesterase, TesB family.
  
    0.429
Patl_1545
Hypothetical protein.
  
     0.416
Patl_3068
PFAM: Capsule polysaccharide biosynthesis; KEGG: tcx:Tcr_1514 capsule polysaccharide biosynthesis.
  
     0.409
Your Current Organism:
Pseudoalteromonas atlantica
NCBI taxonomy Id: 342610
Other names: P. atlantica T6c, Pseudoalteromonas atlantica T6c, Pseudoalteromonas atlantica str. T6c, Pseudoalteromonas atlantica strain T6c
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.