STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Patl_2551PFAM: Alcohol dehydrogenase, zinc-binding Alcohol dehydrogenase GroES-like; KEGG: nfa:nfa30750 putative dehydrogenase. (341 aa)    
Predicted Functional Partners:
Patl_2550
PFAM: Mandelate racemase/muconate lactonizing enzyme-like; KEGG: sco:SCO3480 putative racemase.
 
  
 0.952
Patl_2552
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bld:BLi03830 2-keto-3-deoxygluconate oxidoreductase; RBL02950.
 
 
  0.922
Patl_3762
PFAM: alpha-acetolactate decarboxylase; KEGG: mma:MM0639 alpha-acetolactate decarboxylase.
     
 0.911
Patl_2719
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: mac:MA0415 2,5-dichloro-2,5-cyclohexadiene-1,4-diol dehydrogenase.
  
 
  0.900
Patl_2553
PFAM: aldehyde dehydrogenase; KEGG: gox:GOX1712 aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
 
 
 0.789
Patl_0839
PFAM: Ig-like, group 2; KEGG: rba:RB3421 probable beta-agarase [precursor].
  
     0.617
Patl_0812
KEGG: sco:SCO3481 hypothetical protein.
  
   
 0.616
Patl_1904
Agarase; KEGG: rba:RB3421 probable beta-agarase [precursor].
  
     0.595
Patl_2341
Agarase; PFAM: Ig-like, group 2; KEGG: rba:RB3421 probable beta-agarase [precursor].
  
     0.594
Patl_2549
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH GntR-like; KEGG: bld:BLi01972 hypothetical protein.
 
   
 0.588
Your Current Organism:
Pseudoalteromonas atlantica
NCBI taxonomy Id: 342610
Other names: P. atlantica T6c, Pseudoalteromonas atlantica T6c, Pseudoalteromonas atlantica str. T6c, Pseudoalteromonas atlantica strain T6c
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