STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Patl_2585PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: cps:CPS_4420 TonB-dependent receptor. (790 aa)    
Predicted Functional Partners:
Patl_0282
KEGG: xac:XAC1528 toxin secretion ABC transporter ATP-binding protein.
  
     0.697
Patl_4165
PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: xcv:XCV2894 TonB-dependent outer membrane receptor.
  
    0.689
Patl_2846
PFAM: protein of unknown function DUF81; KEGG: cps:CPS_1011 hypothetical protein.
  
     0.676
Patl_1081
KEGG: hch:HCH_04697 hypothetical protein.
  
     0.662
Patl_0284
KEGG: xcv:XCV1569 outer membrane efflux protein.
  
    0.657
Patl_0313
PFAM: PepSY-associated TM helix; KEGG: pfo:Pfl_0927 aspartate kinase.
  
     0.634
Patl_3278
PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: cps:CPS_3698 TonB-dependent receptor.
  
    0.634
Patl_3635
PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: pha:PSHAa2119 TonB-dependent receptor.
  
     0.620
Patl_1343
KEGG: pha:PSHAb0433 hypothetical protein.
  
     0.610
Patl_0660
TIGRFAM: conserved hypothetical protein; KEGG: pha:PSHAa2824 hypothetical protein.
  
     0.609
Your Current Organism:
Pseudoalteromonas atlantica
NCBI taxonomy Id: 342610
Other names: P. atlantica T6c, Pseudoalteromonas atlantica T6c, Pseudoalteromonas atlantica str. T6c, Pseudoalteromonas atlantica strain T6c
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.