STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Patl_2602PFAM: aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; KEGG: mlo:mll3836 aldehyde dehydrogenase. (749 aa)    
Predicted Functional Partners:
Patl_2601
(2Fe-2S)-binding protein; PFAM: ferredoxin [2Fe-2S]-binding; KEGG: mlo:mll3837 isoquinoline 1-oxidoreductase, alpha subunit.
 
 0.991
Patl_2511
(2Fe-2S)-binding protein; PFAM: ferredoxin [2Fe-2S]-binding; KEGG: ccr:CC0022 isoquinoline 1-oxidoreductase, alpha subunit.
 
 0.964
Patl_3679
(2Fe-2S)-binding protein; PFAM: ferredoxin [2Fe-2S]-binding; KEGG: bja:blr0840 putative aldehyde dehydrogenase subunit III.
 
 0.962
Patl_2603
KEGG: mlo:mll3835 hypothetical protein.
 
    0.864
Patl_2513
PFAM: protein of unknown function DUF182; KEGG: cps:CPS_0280 putative xanthine dehydrogenase accessory factor.
 
  
 0.781
Patl_2512
KEGG: cps:CPS_0279 conserved hypothetical protein.
 
   
 0.725
Your Current Organism:
Pseudoalteromonas atlantica
NCBI taxonomy Id: 342610
Other names: P. atlantica T6c, Pseudoalteromonas atlantica T6c, Pseudoalteromonas atlantica str. T6c, Pseudoalteromonas atlantica strain T6c
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.