STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Patl_2663KEGG: eba:ebA1785 hypothetical protein. (253 aa)    
Predicted Functional Partners:
Patl_2662
Diguanylate cyclase/phosphodiesterase; PFAM: conserved hypothetical protein EAL histidine kinase, HAMP region; KEGG: eba:ebA1787 hypothetical protein.
 
 
 0.950
Patl_1079
TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein EAL histidine kinase, HAMP region; KEGG: tcx:Tcr_0208 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains).
 
 
 0.821
Patl_2661
TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD; KEGG: eba:ebA1805 HlyD family secretion protein.
 
  
 0.802
Patl_2659
TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: eba:ebA1783 outer membrane protein, ortholog involved in agglutination in some bacteria.
 
   
 0.799
Patl_2660
PFAM: ABC transporter related; SMART: ATPase; KEGG: eba:ebA1807 ABC transporter, ATP-binding/permease.
 
   
 0.793
Patl_2665
TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein EAL; KEGG: lpf:lpl1176 hypothetical protein.
   
 
 0.506
Patl_2664
GAF sensor hybrid histidine kinase; PFAM: response regulator receiver GAF ATP-binding region, ATPase-like histidine kinase A-like PAS fold-3; SMART: PAC motif; KEGG: dar:Daro_1614 PAS.
     
 0.490
Your Current Organism:
Pseudoalteromonas atlantica
NCBI taxonomy Id: 342610
Other names: P. atlantica T6c, Pseudoalteromonas atlantica T6c, Pseudoalteromonas atlantica str. T6c, Pseudoalteromonas atlantica strain T6c
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.